create-definitions-from-ohdsi
OfficialConvert OHDSI cohorts to dismech definitions.
Authormonarch-initiative
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Transforms OHDSI/ATLAS cohort definitions into dismech definitions blocks to enable consistent representation of computable phenotypes in the knowledge base.
Core Features & Use Cases
- Convert ATLAS/WebAPI cohort JSON into a dismech definitions fragment.
- Wrap the fragment under a top-level definitions key and map FHIR/CQL logic into the same structure.
- Align with dismech norms by adding evidence snippets, scope, and term objects; example use: converting a published OHDSI cohort for a case-control study.
Quick Start
Export an ATLAS cohort JSON and run the included ohdsi_cohort_to_definition.py script to generate a dismech definition fragment.
Dependency Matrix
Required Modules
pyyaml
Components
scriptsreferences
💻 Claude Code Installation
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Please help me install this Skill: Name: create-definitions-from-ohdsi Download link: https://github.com/monarch-initiative/dismech/archive/main.zip#create-definitions-from-ohdsi Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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