constructboundary
CommunityPredict optimal protein construct boundaries.
Education & Research#pdb#alphafold#uniprot#domain-boundaries#construct-boundaries#protein-expression#truncation-design
Authorfarnunglab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This tool analyzes protein sequences to identify optimal truncation boundaries for recombinant expression constructs, enabling efficient structural biology workflows and higher-quality purified proteins.
Core Features & Use Cases
- Boundary prediction: Suggest domain-based and disorder-informed truncations that maximize expression and crystallization potential.
- Input flexibility: Accepts UniProt IDs, gene names, or raw sequences to generate boundary options.
- Evidence-informed design: Leverages data from UniProt, AlphaFold DB, and PDB to align predicted boundaries with known structures and confidence scores.
Quick Start
Run with a UniProt ID (for example CHD1_HUMAN) to obtain predicted construct boundaries.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: constructboundary Download link: https://github.com/farnunglab/benchaid/archive/main.zip#constructboundary Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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