clustermarkers
CommunityIdentify cluster markers and enrich pathways.
System Documentation
What problem does it solve?
Finds differentially expressed genes (markers) for clusters of T/B cells using Seurat's FindMarkers function. Performs statistical testing between clusters, identifies cluster-defining genes, and automatically runs pathway enrichment analysis (via Enrichr) on significant markers. Generates publication-ready visualizations including volcano plots, dot plots, heatmaps, and enrichment plots.
Core Features & Use Cases
- After Seurat clustering, interpret clusters by identifying marker genes and their enriched pathways.
- Automatically perform enrichment analyses with Enrichr to reveal functional themes.
- Produce publication-quality visuals (volcano plots, dot plots, heatmaps) for reports and manuscripts.
Quick Start
Run cluster marker analysis on a SeuratClustering object to identify cluster-defining genes and generate enrichment visualizations.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: clustermarkers Download link: https://github.com/pwwang/immunopipe/archive/main.zip#clustermarkers Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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