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clonalstats

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Quantify clonality and diversity.

Data & Analytics#analysis#tcr#diversity#immune#clonality#bcr#repertoire
Authorpwwang
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Analyze TCR/BCR repertoires by computing clonality statistics and diversity visualizations, enabling researchers to quantify clonal expansion and compare immune diversity across samples.

Core Features & Use Cases

  • Quantifies clonal expansion and computes diversity metrics (Shannon, Simpson, Gini).
  • Generates publication-ready plots to summarize repertoire characteristics across conditions.
  • Works downstream of ScRepCombiningExpression to analyze integrated TCR+RNA data.

Quick Start

Run ClonalStats after ScRepCombiningExpression to generate clonality statistics and plots for your sample set.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: clonalstats
Download link: https://github.com/pwwang/immunopipe/archive/main.zip#clonalstats

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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