celltypeannotation

Name: celltypeannotation
Availability: InStock
Author: pwwang

Community

Automates robust cell-type labeling for clusters.

Data & Analytics #scrna-seq #cell-type-annotation #cell-cluster-labeling #annotation-tools #scType #scCATCH #celltypist

Authorpwwang

Version1.0.0

Installs0

System Documentation

What problem does it solve?

Annotates clustering results with biological cell type labels to give meaningful identities to clusters, enabling downstream interpretation and comparison across samples.

Core Features & Use Cases

Direct assignment
ScType
scCATCH
hitype
CellTypist
Seamless integration with Seurat objects and h5ad inputs for PBMC and multi-sample datasets

Quick Start

Supply your Seurat clustering results and run this workflow to obtain labeled cell types for each cluster.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: celltypeannotation
Download link: https://github.com/pwwang/immunopipe/archive/main.zip#celltypeannotation

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.

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