cbioportal-database
CommunityQuery cancer genomics data.
Education & Research#cancer genomics#survival analysis#gene expression#cbioportal#mutation data#copy number alteration
AuthorYezez9
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill provides programmatic access to a vast repository of cancer genomics data, enabling researchers to analyze mutations, copy number alterations, and gene expression across hundreds of cancer studies.
Core Features & Use Cases
- Query cBioPortal: Access somatic mutations, copy number alterations (CNA), gene expression, and survival data.
- Cancer Genomics Analysis: Essential for cancer target validation, oncogene/tumor suppressor analysis, and patient-level genomic profiling.
- Use Case: Investigate the mutation frequency of a specific gene across multiple TCGA cancer types to identify potential pan-cancer targets.
Quick Start
Use the cbioportal-database skill to get the mutation frequency of TP53 in the brca_tcga study.
Dependency Matrix
Required Modules
pandasrequests
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: cbioportal-database Download link: https://github.com/Yezez9/Research-Agent/archive/main.zip#cbioportal-database Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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