bulkrna-de
OfficialFind differentially expressed genes.
AuthorTianGzlab
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the complex process of identifying genes that show significant changes in expression levels between different biological conditions in bulk RNA sequencing data.
Core Features & Use Cases
- Automated DE Analysis: Runs DESeq2 (via PyDESeq2) or a t-test on count data.
- Data Visualization: Generates volcano plots, MA plots, and summary bar charts.
- Use Case: Analyze RNA-seq data from treated versus control cell lines to discover genes that are up- or down-regulated in response to the treatment.
Quick Start
Run differential expression analysis on my bulk RNA-seq counts.
Dependency Matrix
Required Modules
numpypandasscipymatplotlib
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bulkrna-de Download link: https://github.com/TianGzlab/OmicsClaw/archive/main.zip#bulkrna-de Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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