BU SCC Ops
CommunityRun dnadesign on BU SCC
Authore-south
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies and standardizes the process of running dnadesign bioinformatics workloads on the BU SCC (High-Performance Computing) cluster, ensuring efficient resource utilization and predictable job execution.
Core Features & Use Cases
- Resource Management: Selects appropriate scheduler resources (CPU, GPU, memory, walltime) based on workload type (DenseGen, Evo2, Notify).
- Job Submission: Facilitates interactive sessions (
qrsh) and batch job submissions (qsub) for variousdnadesigntools. - Preflight Validation: Includes checks to validate configurations and event sources before submitting long-running or resource-intensive jobs.
- Use Case: A researcher needs to run a large-scale Evo2 inference job on the BU SCC. They can use this Skill to specify GPU requirements, load necessary modules, and submit the job as a batch process, ensuring it runs efficiently and reliably.
Quick Start
Use the BU SCC Ops skill to submit a DenseGen batch job with 16 CPU cores and 8GB of memory per core.
Dependency Matrix
Required Modules
None requiredComponents
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: BU SCC Ops Download link: https://github.com/e-south/dnadesign/archive/main.zip#bu-scc-ops Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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