blat-api-searching
CommunityLocal BLAT searches with 2bit references.
Authordakesan
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill enables local BLAT searches against hg38 or CHM13 using downloaded 2bit references, providing PSL outputs and JSON-ready results without relying on external web services.
Core Features & Use Cases
- Local BLAT: Run BLAT searches with local 2bit references.
- PSL Parsing: Parse PSL/PSL-like outputs into structured data.
- Reference Management: Automatically download and manage 2bit references for hg38 and CHM13.
Quick Start
Run a local BLAT search against hg38 with a query FASTA and output results to blat.json.
Dependency Matrix
Required Modules
typer
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: blat-api-searching Download link: https://github.com/dakesan/cc-dnawork-plugin/archive/main.zip#blat-api-searching Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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