bioservices-multi-database
CommunityAccess 40+ bioinformatics databases
Education & Research#python#bioinformatics#api integration#web services#identifier mapping#database access
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill simplifies complex bioinformatics data retrieval by providing a unified Python interface to over 40 different web services, eliminating the need to learn and manage multiple APIs.
Core Features & Use Cases
- Unified Access: Query proteins (UniProt), pathways (KEGG), compounds (ChEMBL, PubChem), and more through a single library.
- Cross-Database Integration: Seamlessly map identifiers between different biological databases.
- Use Case: You need to find all known pathways and protein-protein interactions for a given human protein. This Skill can retrieve the protein's UniProt ID, map it to a KEGG pathway ID, fetch pathway details, and then query for interaction partners.
Quick Start
Use the bioservices-multi-database skill to search for UniProt entry P00520 and print its accession, gene names, and organism.
Dependency Matrix
Required Modules
bioservicespandasmatplotlibxml.etree.ElementTreecollectionsCounter
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bioservices-multi-database Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#bioservices-multi-database Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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