biopython-sequence-analysis
CommunityUnlock sequence data: NCBI, BLAST, Align, Phylogeny
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill streamlines complex bioinformatics workflows by providing tools to fetch, analyze, and interpret biological sequence data from public databases and local files.
Core Features & Use Cases
- Data Retrieval: Download sequences and annotations from NCBI databases (Entrez).
- Sequence Analysis: Parse various file formats (FASTA, GenBank, GFF), perform alignments (pairwise, multiple), and build phylogenetic trees.
- Similarity Search: Run BLAST searches locally or remotely to find homologous sequences.
- Use Case: Analyze a gene family by downloading orthologs from NCBI, aligning them using MUSCLE, and constructing a phylogenetic tree to understand evolutionary relationships.
Quick Start
Fetch the GenBank record for NM_007294 and print its basic statistics.
Dependency Matrix
Required Modules
biopythonnumpymatplotlibmuscle
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: biopython-sequence-analysis Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#biopython-sequence-analysis Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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