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biomarker-pipeline

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Biomarker analysis pipeline

Data & Analytics#llm#claude#pipeline#gemini#biomarker#clinical report
Authorgreatxrider
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill provides a fallback mechanism for running a two-stage biomarker analysis pipeline when the primary VectorShift pipeline is unavailable, enabling manual or CLI-based biomarker report generation.

Core Features & Use Cases

  • Two-Stage LLM Pipeline: Utilizes Gemini for clinical report generation and Claude for visual HTML summarization.
  • Fallback Functionality: Serves as a standalone replica of the VectorShift "Basic LG Pipeline V2".
  • Use Case: A researcher needs to generate a clinical report and an executive summary from patient lab data but the usual automated pipeline is down. They can use this Skill to achieve the same result via CLI or Python script.

Quick Start

Use the biomarker-pipeline skill to generate a visual HTML report from the provided patient lab data.

Dependency Matrix

Required Modules

None required

Components

scriptsreferences

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: biomarker-pipeline
Download link: https://github.com/greatxrider/nomanuAI/archive/main.zip#biomarker-pipeline

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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