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bioinformatics-project-setup

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Scaffold clean, scalable bioinformatics projects.

Data & Analytics#templates#bioinformatics#setup#project-structure#git-init#consensus-workflow
Authorkstawiski
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This skill provides a standardized scaffold for new bioinformatics, genomics, imaging, or computational biology projects, ensuring clear separation of raw data, code, analysis workspace, and results, with a ready-to-share structure.

Core Features & Use Cases

  • Directory scaffolding: Creates data_bucket (read-only mount point), metadata, plan, analysis, results, code, work, and temp directories.
  • CLAUDE.md / AGENTS.md generation: Produces documentation to guide agents and collaborators; enables consistent onboarding.
  • Git initialization: Initializes a git repository in the code/ directory with a template README and .gitignore to manage code and pipelines.
  • Consensus-ready templates: Generates a plan/plan.md template for the consensus workflow and a basic analysis scaffold.

Quick Start

Run the setup script to scaffold a new project. For example: bash scripts/setup.sh /path/to/project 'Study Title'

Dependency Matrix

Required Modules

git

Components

scripts

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bioinformatics-project-setup
Download link: https://github.com/kstawiski/claude-skills/archive/main.zip#bioinformatics-project-setup

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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