biocontext-knowledge-queries
CommunityBioContext knowledge queries
Education & Research#gene annotation#drug discovery#pathway analysis#literature search#biomedical#protein information#cell type markers
AuthorStarlitnightly
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This skill provides programmatic access to 49 biomedical databases, enabling users to quickly look up gene/protein annotations, query pathway databases, find cell type markers, search biomedical literature, and explore drug-disease associations.
Core Features & Use Cases
- Gene/Protein Annotation: Retrieve function, domains, GO terms, and structures for genes/proteins.
- Pathway & Literature Search: Find pathways associated with genes and search biomedical literature.
- Cell Type Markers: Identify known marker genes for specific cell types and organs.
- Drug & Disease Associations: Explore links between genes, diseases, and drugs, and search clinical trials.
- Use Case: Annotate a list of differentially expressed genes with their known functions, associated pathways, and relevant literature.
Quick Start
Use the biocontext-knowledge-queries skill to query UniProt for the function of the gene symbol 'TP53' in humans.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: biocontext-knowledge-queries Download link: https://github.com/Starlitnightly/omicclaw/archive/main.zip#biocontext-knowledge-queries Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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