bio-workflow-methods-docwriter
CommunityPublish reproducible Methods from workflow artifacts.
Authorfmschulz
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Researchers often lack a reproducible record of how workflow runs were performed, making publication and auditability difficult.
Core Features & Use Cases
- Generate publication-ready Methods and run documentation directly from workflow artifacts (Nextflow, Snakemake, CWL).
- Build a machine-readable run_manifest.yaml capturing commands, tool versions, parameters, QC gates, and outputs.
- Produce a concise workflow summary in METHODS.md suitable for methods sections of manuscripts.
Quick Start
Collect the workflow evidence package and run the extractor to produce METHODS.md and run_manifest.yaml.
Dependency Matrix
Required Modules
pyyamljsonschema
Components
scriptsreferences
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Please help me install this Skill: Name: bio-workflow-methods-docwriter Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#bio-workflow-methods-docwriter Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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