bio-viromics
CommunityIdentify, classify, and QC viral contigs at scale.
Authorfmschulz
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Viromics workflows require detection, classification, and QC of viral contigs from metagenomic assemblies. This skill provides an integrated approach to identify viral sequences, assign taxonomy, and assess genome quality to streamline downstream analyses.
Core Features & Use Cases
- Detect viral contigs using geNomad
- Classify and cluster viral genomes with vConTACT3
- Assess genome completeness and contamination with CheckV
- Optional giant-virus taxonomy analysis with GVClass
- Use cases: end-to-end viromics analysis from assembly to taxonomy and QC, ecological studies, and publication-ready datasets.
Quick Start
Provide contigs.fasta and reference databases, then run the bio-viromics workflow to generate viral contig detections, taxonomy outputs, and QC reports.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-viromics Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#bio-viromics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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