bio-reads-qc-mapping
CommunityReproducible QC and mapping for sequencing reads.
Authorfmschulz
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Ingest, QC, and map reads with reproducible outputs. Use for raw read processing and coverage stats.
Core Features & Use Cases
- Ingest and validate sample sheets and input reads
- Run QC/trimming and map reads to a reference to generate coverage statistics
- Use in small to large sequencing projects, including Illumina short reads and long-read data, with transparent logging and reproducible results
Quick Start
Process raw sequencing reads by performing QC and mapping to a reference to generate basic coverage reports.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-reads-qc-mapping Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#bio-reads-qc-mapping Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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