bio-prefect-dask-nextflow
CommunityOrchestrate omics pipelines across platforms.
Authorfmschulz
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Designs and scaffolds interoperable bioinformatics pipelines by selecting appropriate engines (Prefect+Dask for local/distributed execution or Nextflow for HPC), enabling rapid prototyping and deployment.
Core Features & Use Cases
- Prefect+Dask for local and distributed execution to accelerate Python-based tasks and data processing.
- Nextflow for HPC environments with Slurm/PBS integration and portable configs.
- Runnable scaffold generation with engine decision logic, resource planning, and validation steps.
Quick Start
Provide your environment details (local, cluster, or HPC) and run the scaffold generator to produce a runnable project.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-prefect-dask-nextflow Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#bio-prefect-dask-nextflow Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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