bio-phylogenetics
OfficialUnravel evolutionary histories.
Education & Research#bioinformatics#genomics#phylogenetics#sequence alignment#iqtree#mafft#evolutionary tree
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the complex process of reconstructing evolutionary relationships between biological sequences, enabling deep insights into evolution, disease spread, and genetic diversity.
Core Features & Use Cases
- Automated Phylogeny Pipeline: Integrates alignment (MAFFT), tree inference (IQ-TREE 2, FastTree), and visualization (ETE3).
- Versatile Applications: Ideal for evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.
- Use Case: Analyze the evolutionary relationships of a set of newly discovered viral sequences to understand their origin and spread during an outbreak.
Quick Start
Run a full phylogenetic analysis on the provided nucleotide sequences in 'sequences.fasta' using 8 threads.
Dependency Matrix
Required Modules
mafftiqtree2ete3trimalfasttree
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-phylogenetics Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#bio-phylogenetics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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