bio-pathml
OfficialAdvanced computational pathology toolkit.
Education & Research#machine learning#pathology#whole slide imaging#computational imaging#multiplex imaging#spatial biology
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates complex computational pathology workflows, enabling advanced analysis of whole-slide images and multiplexed data.
Core Features & Use Cases
- Whole-Slide Image Analysis: Load, preprocess, and analyze diverse WSI formats.
- Multiparametric Imaging: Process CODEX, Vectra, and MERFISH data for spatial proteomics/transcriptomics.
- Machine Learning: Train and deploy models for nucleus segmentation and classification.
- Use Case: Analyze multiplexed immunofluorescence slides to identify and quantify immune cell populations within tumor microenvironments, generating spatial graphs for interaction analysis.
Quick Start
Use the bio-pathml skill to load a whole-slide image and perform tissue detection and stain normalization.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-pathml Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#bio-pathml Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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