Skills
.Work. You
Rest

bio-nextflow-manager

Official

Run bioinformatics pipelines.

Education & Research#data analysis#bioinformatics#omics#nextflow#rnaseq#variant calling
Authorfrumu-ai
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill automates the deployment and execution of complex bioinformatics pipelines for analyzing omics sequencing data, making advanced analysis accessible to researchers without deep bioinformatics expertise.

Core Features & Use Cases

  • Pipeline Execution: Runs nf-core pipelines (rnaseq, sarek, atacseq) for RNA-seq, WGS/WES, and ATAC-seq data.
  • Data Acquisition: Facilitates downloading public datasets from GEO/SRA.
  • Environment Management: Checks and ensures necessary software (Python, Bash, Docker, Nextflow, Java) is correctly configured.
  • Use Case: A biologist needs to analyze RNA sequencing data from a public GEO dataset to understand gene expression. This Skill can download the data, set up the environment, run the rnaseq pipeline, and verify the results.

Quick Start

Use the bio-nextflow-manager skill to run the rnaseq pipeline on the data located at /path/to/fastq.

Dependency Matrix

Required Modules

None required

Components

scriptsreferences

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-nextflow-manager
Download link: https://github.com/frumu-ai/tandem/archive/main.zip#bio-nextflow-manager

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
View Source Repository

Agent Skills Search Helper

Install a tiny helper to your Agent, search and equip skill from 223,000+ vetted skills library on demand.