bio-neuropixels-analysis
OfficialAnalyze Neuropixels neural recordings.
Education & Research#data analysis#spike sorting#electrophysiology#neuropixels#kilosort4#spikeinterface#neural recording
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill streamlines the complex process of analyzing high-density neural recordings from Neuropixels probes, from raw data to publication-ready results.
Core Features & Use Cases
- End-to-End Analysis: Supports the full workflow including preprocessing, motion correction, spike sorting, quality metrics, and curation.
- Flexible Data Handling: Works with common Neuropixels data formats like SpikeGLX and OpenEphys.
- Use Case: Analyze a Neuropixels recording session by loading the data, running Kilosort4 for spike sorting, computing quality metrics, and automatically curating units using Allen Institute criteria.
Quick Start
Use the bio-neuropixels-analysis skill to run the full analysis pipeline on the provided Neuropixels data.
Dependency Matrix
Required Modules
spikeinterface[full]probeinterfaceneokilosortspykingcircusmountainsort5anthropicibl-neuropixelibllibbombcellunitmatch
Components
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-neuropixels-analysis Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#bio-neuropixels-analysis Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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