bio-medchem
OfficialFilter compounds for drug discovery.
Data & Analytics#drug discovery#medicinal chemistry#cheminformatics#drug likeness#structural alerts#compound filtering
Authorbiomaps-infra
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the complex and time-consuming process of filtering chemical compounds based on medicinal chemistry rules and structural alerts, enabling faster and more efficient drug discovery.
Core Features & Use Cases
- Drug-likeness Assessment: Apply established rules like Lipinski's Rule of Five and Veber's rules to assess oral bioavailability.
- Structural Alert Filtering: Identify and remove problematic chemical substructures (PAINS, NIBR, Lilly demerits) that can lead to assay interference or toxicity.
- Use Case: When prioritizing a large library of synthesized compounds for further testing, use this Skill to quickly identify candidates that meet key drug-likeness criteria and are free from known problematic chemical motifs.
Quick Start
Use the bio-medchem skill to apply the Rule of Five and common structural alerts to a list of molecules.
Dependency Matrix
Required Modules
medchemdatamolrdkit-pypipandastqdm
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-medchem Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#bio-medchem Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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