bio-logicode-v2
CommunityTranslate bioinformatics workflows into auditable code.
Data & Analytics#documentation#bioinformatics#reproducibility#workflow-translation#auditable-reports#pipeline-traceability
AuthorLCGaoZzz
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Bio-LogiCode converts narrative workflow descriptions into auditable, executable code and documentation, enabling reproducibility and traceability across bioinformatics pipelines.
Core Features & Use Cases
- Workflow-to-code mapping: given a protocol, produce step-by-step mapping including biological and computational intents and evidence.
- Evidence-Grade Code Citation: provide pointers to scripts/configs or pipeline outputs.
- Intelligent exploration of precomputed outputs: infer pipeline steps from outputs like Space Ranger / Xenium / scRNA outputs.
- Multi-Language + Multi-Ecosystem: R, Python, Shell; standard pipelines; progressive reporting; produce structured deliverables.
Quick Start
Translate the repository's Methods/protocols into an auditable Workflow-to-Code report.
Dependency Matrix
Required Modules
happy
Components
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-logicode-v2 Download link: https://github.com/LCGaoZzz/bio-logicode-v2/archive/main.zip#bio-logicode-v2 Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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