bio-gene-calling
CommunityPredict gene features across all life forms.
Education & Research#gene-calling#genome-annotation#prokaryotes#viruses#tRNA-detection#rRNA-detection#gff3-output
Authorfmschulz
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Call genes and annotate basic features for prokaryotes, viruses, and eukaryotes.
Core Features & Use Cases
- Gene calling across diverse organisms: select appropriate caller (Prodigal, Prodigal-GV, BRAKER, AUGUSTUS) based on organism class and data availability.
- Output generation: produce standard formats like GFF3, FAA, and FNA; optionally detect tRNAs and rRNAs.
- Workflow integration: applicable to contigs or bins in metagenomic or isolated genomes; suitable for end-to-end annotation pipelines.
Quick Start
Run bio-gene-calling on input contigs to produce GFF3, FAA, and FNA outputs.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-gene-calling Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#bio-gene-calling Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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