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bio-cellxgene-census

Official

Query the CELLxGENE Census

Data & Analytics#data analysis#bioinformatics#genomics#single-cell#cellxgene#expression data
Authorbiomaps-infra
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill provides programmatic access to the CELLxGENE Census, a massive, curated collection of single-cell genomics data, enabling efficient querying and analysis of millions of cells.

Core Features & Use Cases

  • Query Expression Data: Retrieve gene expression data based on cell types, tissues, diseases, and other metadata.
  • Explore Metadata: Discover available datasets, cell types, tissues, and diseases within the Census.
  • Machine Learning Integration: Facilitates training ML models on single-cell data using PyTorch.
  • Scanpy Integration: Seamlessly integrate Census data into existing scanpy analysis workflows.
  • Use Case: Analyze the expression of specific marker genes across different cell types in the human brain, or train a cell type classifier using millions of cells.

Quick Start

Use the bio-cellxgene-census skill to query expression data for 'B cells' in the 'lung' tissue for 'Homo sapiens'.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-cellxgene-census
Download link: https://github.com/biomaps-infra/blender-opencode/archive/main.zip#bio-cellxgene-census

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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