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bio-annotation

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Automate protein function and taxonomy.

Data & Analytics#taxonomy#annotation#diamond#protein-function#interproscan#eggnog-mapper#taxonkit
Authorfmschulz
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Annotation of protein functions and taxonomy from sequence homology to accelerate omics analyses.

Core Features & Use Cases

  • InterProScan for domain/family annotation
  • eggNOG-mapper for orthology-based annotation
  • DIAMOND with TaxonKit for taxonomy inference
  • Input: proteins.faa and reference_db directories
  • Output: results/bio-annotation/ with annotation reports and taxonomy tables

Quick Start

Run the bio-annotation workflow with your proteins.faa and reference databases to generate functional annotations and taxonomy results.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-annotation
Download link: https://github.com/fmschulz/omics-skills/archive/main.zip#bio-annotation

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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