bepipred3

What problem does it solve?

BepiPred-3.0 provides rapid prediction of linear B-cell epitopes from protein sequences using ESM-2 embeddings, enabling researchers to identify immunogenic regions without manual per-sequence analysis.

Core Features & Use Cases

• GPU-accelerated epitope prediction: Run predictions on protein sequences with per-residue probability scores and interactive HTML visualization.
• Vaccine design & antigen analysis: Supports rapid screening of candidate sequences for immunogenic regions, aiding design and validation workflows.
• Use Case: For a set of viral protein sequences, run bepipred3 to obtain per-residue scores and visualizations to prioritize epitopes for experimental testing.

Quick Start

Use the bepipred3 skill to predict epitopes for input sequences using the provided CLI and Docker image ghcr.io/open-prophetdb/bepipred3:arm64-blackwell.