arboreto-grn-inference
CommunityInfer gene regulatory networks
Authorjaechang-hits
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill automates the inference of gene regulatory networks (GRNs) from gene expression data, helping researchers understand complex biological systems.
Core Features & Use Cases
- GRN Inference: Uses GRNBoost2 or GENIE3 algorithms to identify transcription factor-target gene relationships.
- Scalability: Dask-parallelized for efficient processing of large single-cell RNA-seq datasets.
- Use Case: Analyze gene expression data to discover key regulatory pathways controlling cellular processes, essential for drug discovery and systems biology.
Quick Start
Infer a gene regulatory network from the expression data in 'expression_data.tsv' using the transcription factors listed in 'tf_list.txt'.
Dependency Matrix
Required Modules
arboretopandasnumpydaskdistributedscikit-learnscipynetworkxmatplotlibanndata
Components
scriptsreferences
💻 Claude Code Installation
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Please help me install this Skill: Name: arboreto-grn-inference Download link: https://github.com/jaechang-hits/SciAgent-Skills/archive/main.zip#arboreto-grn-inference Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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