Visualize antibody structures and interactions in PyMOL.
npx skills add https://github.com/ANaka/claudemol --skill antibody-visualization
Please help me install this Agent Skill. Skill: antibody-visualization Source: https://github.com/ANaka/claudemol/tree/main/claude-plugin/skills/antibody-visualization Command: npx skills add https://github.com/ANaka/claudemol --skill antibody-visualization
Annotating and visualizing antibodies, Fab fragments, and their antigen interfaces within PyMOL to streamline structural interpretation.
Load a PDB of an antibody–antigen complex into PyMOL and apply the antibody-visualization workflow to highlight CDR regions and interfaces.
High-intent search queries and answers about installing and using this skill.
To visualize CDR loops in PyMOL, load an antibody Fab fragment PDB file and apply a color-coded workflow to identify, highlight, and distinguish the CDR regions from the structural framework.
The best way to highlight an antigen-antibody interface is to use standard PyMOL scripting to apply specific color schemes and representations to the epitope and paratope, generating publication-ready structural visuals.
Yes, you can identify both epitopes and paratopes using standard PyMOL scripts by applying an antibody visualization workflow that analyzes the structural interface of the antigen-antibody complex.
To analyze Fab fragment interactions in PyMOL, load the antibody-antigen complex PDB and apply interface analysis workflows to color code the binding regions, streamlining structural interpretation.
This antibody visualization workflow operates via standard PyMOL scripting using a pymol-agent-bridge, requiring no external dependencies to annotate antibody structures and highlight CDR regions.
A specialized workflow streamlines structural interpretation by automatically identifying CDR loops, epitopes, and paratopes, saving time compared to manual PyMOL coloring when annotating antibody structures.
ANakaLaunch a PyMOL session via pymol-agent-bridge for molecular visualization and image export.
JunMA98Generate publication-ready CS visualizations with accessible color palettes and export formats.
awslabsStandardize protein structure analysis workflows with PDB/mmCIF parsing, RMSD superposition, and binding pocket detection.
junior1pDesign antigen-conditioned antibody and nanobody CDR loops from X-masked FASTA inputs.
