anndata
CommunityAnnotated data matrices for single-cell workflows.
Authorjackspace
Version1.0.0
Installs0
System Documentation
What problem does it solve?
AnnData provides a structured container for X, obs, var, and other components, enabling efficient storage, manipulation, and analysis of annotated data for single-cell genomics and beyond.
Core Features & Use Cases
- Core data structure: X, obs, var, layers, obsm, varm, etc.
- I/O operations: Read/write h5ad, zarr, csv, loom, etc.
- Subsetting & manipulation: Filtering, slicing, transposing, and deriving metadata.
- Scverse integration: Works with Scanpy, scverse ecosystem.
- Use cases include single-cell RNA-seq pipelines and large multi-omics datasets.
Quick Start
Create an AnnData object with a small X matrix and basic metadata, then subset by a condition.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: anndata Download link: https://github.com/jackspace/ClaudeSkillz/archive/main.zip#anndata Please download this .zip file, extract it, and install it in the .claude/skills/ directory.