admet-prediction

Predict ADMET properties from SMILES using GraphMVP ensemble models.

1.1k|132|Updated Apr 13, 2023
One-click install
npx skills add https://github.com/PharMolix/OpenBioMed --skill admet-prediction
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: admet-prediction
Source: https://github.com/PharMolix/OpenBioMed/tree/main/skills/admet-prediction
Command: npx skills add https://github.com/PharMolix/OpenBioMed --skill admet-prediction

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Predict comprehensive ADMET properties for drug candidate molecules using GraphMVP ensemble models to accelerate early-stage drug discovery.

Core Features & Use Cases

  • Load a molecule from SMILES and build an ensemble of ADMET predictors.
  • Predict BBB penetration, SIDER side effects, Caco-2 permeability, half-life, and LD50.
  • Use case: rapidly screen candidates for safety and pharmacokinetic risk before synthesis.

Quick Start

Input a molecule's SMILES string and run the GraphMVP ADMET ensemble to obtain BBB penetration, SIDER probabilities, Caco-2 permeability, half-life, and LD50 estimates.

Frequently Asked Questions about admet-prediction

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I predict ADMET properties for a drug candidate molecule using SMILES?▼

To predict ADMET properties, input a molecule's SMILES string and run the GraphMVP ensemble to output BBB penetration, SIDER side effects, Caco-2 permeability, half-life, and LD50 estimates.

What pharmacokinetic and toxicity indicators can I evaluate during early-stage drug discovery?▼

During early-stage drug discovery, you can evaluate safety and pharmacokinetic risk profiles by predicting BBB penetration, SIDER side effects, Caco-2 permeability, half-life, and LD50 using GraphMVP ensemble models.

Do I need GraphMVP checkpoints and configuration YAMLs to run ADMET predictions?▼

Yes, performing deterministic ADMET inference via the OpenBioMed pipeline requires SMILES input along with access to GraphMVP checkpoints and configuration YAMLs.

Can I use GraphMVP ensemble models to screen Caco-2 permeability and LD50 before synthesis?▼

Yes, you can rapidly screen drug candidates for Caco-2 permeability and LD50 safety profiles before synthesis by running the GraphMVP ensemble ADMET predictors.

What are the limitations of using GraphMVP for ADMET prediction?▼

GraphMVP ADMET prediction is limited to deterministic inference via the OpenBioMed pipeline, requiring specific checkpoints and YAML configurations to output BBB, SIDER, Caco-2, half-life, and LD50 metrics.