K-Dense-AIOfficial·27 Agent Skills Included

claude-scientific-skills

Turn any AI agent into a scientific research assistant

Equips AI agents with 163 ready-to-use skills for bioinformatics, cheminformatics, clinical research, geospatial analysis, statistics, and scientific writing. Connects agents to 100+ scientific databases and specialized Python libraries without manual API or tooling setup. Eliminates guesswork in complex workflows like variant surveillance, PK/PD modeling, survival analysis, and literature review with tested, version-pinned guidance.

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npx skills add K-Dense-AI/claude-scientific-skills --all -g -y

All Skills in This Repository (27)

Pure Emerald Level Indicators

📦 In Repo

K-Dense-AI

kegg-database

Query KEGG pathways, genes, compounds, and drugs via REST API endpoints.

lamindb

Manage biological datasets with lineage tracking, validation, and ontology-backed annotation.

zinc-database

Query ZINC22 for purchasable compounds and download 3D structures for docking.

alphagenome

Query precomputed AlphaGenome Atlas variant impact scores and predict regulatory effects of GRCh38 SNVs.

alphafold-database

Retrieve AlphaFold-predicted protein structures and confidence metrics by UniProt IDs.

paperclip

Search and read biomedical papers, regulatory documents, and clinical trials via the Paperclip CLI.

bgpt-paper-search

Search scientific papers and retrieve structured experimental data via the BGPT MCP server.

tiledbvcf

Store and query genomic variant data from VCF files using TileDB sparse arrays.

pennylane

Optimize quantum circuits with automatic differentiation across simulators and hardware.

metabolomics-workbench-database

Query the NIH Metabolomics Workbench REST API for metabolites, studies, and RefMet nomenclature.

folklore-variant-evidence

Retrieve ClinGen gene-disease assertions and source-linked evidence for public GRCh38 germline variants via Folklore MCP.

scientific-writing

Transform research outlines into IMRAD-structured manuscripts with citations and figures.

Official

Advanced

Frequently Asked Questions

FAQPage Schema

How to install claude-scientific-skills?▼

Run `npx skills add K-Dense-AI/claude-scientific-skills --all -g -y` in your terminal to install all 163 skills globally.

What can Scientific Agent Skills do?▼

It gives your AI agent expert-level workflows for genomics, drug discovery, medical imaging, geospatial analysis, Bayesian statistics, and scientific writing, plus access to over 100 research databases.

Which AI agents work with these skills?▼

Any agent supporting the open Agent Skills standard works, including Claude Code, Cursor, Codex, and Google Antigravity.

Do I need to be a programmer to use it?▼

No. Once installed, you describe your research task in plain language and the agent uses the right skill, library, or database automatically.

Can it search scientific literature and cite papers?▼

Yes. Skills like research-lookup and paperclip retrieve full-text papers, regulatory documents, and clinical trials, and produce line-pinned citations.